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  • 林绪波 ( 副教授 )

    的个人主页 http://shi.buaa.edu.cn/linxubo/zh_CN/index.htm

  •   副教授   博士生导师   硕士生导师
  • 主要任职:Associate Professor
个人简介

林绪波,男,博士生导师、硕士生导师,东南大学生物医学工程博士(2014)、美国德克萨斯大学休斯顿健康科学中心医学院博士后(2014-2017)、北航医学科学与工程学院/医工交叉创新研究院副教授/副研究员(2018至今)曾入选北航医工百人人才计划(2018)、北航第六批青年拔尖人才计划(2018)。


课题组成立于2018年初,主要围绕纳米医学、膜生物物理学以及计算机辅助药物设计开展基础应用研究。近五年在J. Am. Chem. Soc., Nanoscale, J. Chem. Inf. Model., J. Chem. Phys.等杂志发表通讯作者或第一作者论文20余篇,在Cell, Adv. Mater., Biomaterials等杂志上发表其它作者论文多篇。部分工作被著名的生物医学国际组织F1000Prime推荐、遴选为ESI高被引论文以及遴选为J. Chem. Inf. Model.、Langmuir等期刊封面,5篇论文引用大于100次(其中1篇引用近700次)。


课题组研究兴趣:(1)分子生物物理;(2)人工智能生物医药

       

主要涉及的研究方法:分子动力学模拟、增强采样、分子对接、机器学习蛋白质结构预测及蛋白质设计等。


招生招聘信息:

  1. 欢迎具有生物医学工程、物理学、化学、生物学、计算机或软件等学科背景的学生报考课题组的博士生/硕士生(要求:不焦虑、不内耗、具有较高的思考力和执行力);

  2. 欢迎优秀博士依托学校卓越百人计划申请课题组的博士后。


英文主页https://linxubo.github.io/


主讲课程:

  1. 《系统生物学》本科生课程、21秋(48课时)、22秋(48课时)、23秋(56课时)、24秋(56课时)

  2. 《生物分子模拟》部分课程录屏):研究生课程、23秋(32课时)、24秋(32课时)


主持的科研项目:

  1. 国家自然科学基金委员会-面上项目:气体的多尺度力场开发及脂质纳气泡抗肿瘤物理机制的研究(32371302),2024/01-2027/12。

  2. 国家自然科学基金委员会-青年科学基金项目:靶向PD-L1和PS磷脂的抗肿瘤金纳米材料的分子模拟设计和机制研究(21903002),2020/01-2022/12。

  3. 北航第六批青年拔尖人才计划,抗肿瘤纳米药物的精准设计,2018/01-2022/12。

  4. 膜生物学国家重点实验室开放课题:非经典分泌货物调控 TMED10 功能的分子动力学研究(2020KF09),2020/01-2021/12。


课题组当前成员:

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课题组近期发表的主要文章:


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(累计发表论文56篇,#相同贡献,*通讯作者)

  1. Siya Zhang#, Hong-yin Wang#, Xuan Tao#, Zhongwen Chen, Ilya Levental, Xubo Lin*. Palmitoylation of PD-L1 Regulates Its Membrane Orientation and Immune Evasion. Langmuir, 2025, doi: 10.1021/acs.langmuir.4c04441.

  2. Xiaoqian Lin, Xubo Lin*. Regulate PD-L1’s Membrane Orientation Thermodynamics with Hydrophobic Nanoparticles. Biomaterials Science2025, 13(3), 826-835.

  3. Liuyan Yang#, Mingdong Liu#, Lei Qi, Yunhui Liu, Xubo Lin*, Yu-Zhong Zhang*, Qing-Tao Shen*. Annealing synchronizes the TOM complex with Tom7 in a new orientation. Archives of Biochemistry and Biophysics, 2025, 766, 110329.

  4. Xiu Li, Yuan He, Yuxuan Wang, Kaidong Lin, Xubo Lin*. CHARMM36 All-atom Gas Model for Lipid Nanobubble Simulation. J. Chem. Inf. Model.2024, 64, 7503-7512. (Supplementary Cover)

  5. Yuxin Sun#, Xuan Tao#, Yaping Han#Xubo Lin, Rui Tian, Haodong Wang, Pei Chang, Qiming Sun, Liang Ge*, Min Zhang*. A dual role of ERGIC-localized Rabs in TMED10-mediated unconventional protein secretion. Nature Cell Biology, 2024, 26, 1077-1092.

  6. Xiaoqian Lin#, Kaidong Lin#, Shiqi He, Yue Zhou, Xiu Li, Xubo Lin*. Membrane Domain Anti-Registration Induces an Intrinsic Transmembrane Potential. Langmuir, 2023, 39, 11621-11627.

  7. Yifei Zhou, Xubo Lin*. Binding Kinetics of Ten Small-Molecule Drug Candidates on SARS-CoV-2 3CLpro Revealed by Biomolecular Simulations. Med. Nov. Technol. Devices2023, 20, 100257. (Cover and “Editor Choice Paper”)

  8. 林开东, 林晓倩, 林绪波*. 靶向PD-L1蛋白的计算机辅助药物筛选, 物理学报2023, 72, 240501.

  9. Xiu Li, Shiying Zhou, Xubo Lin*. Molecular View on the Impact of DHA Molecules on Physical Properties of Model Cell Membrane. J. Chem. Inf. Model., 2022, 62, 2421-2431.

  10. Baocai Ma, Zuoheng Zhang, Yan Li, Xubo Lin*, Ning Gu*. Evaluation of Interactions between SARS-CoV-2 RBD and Full-length ACE2 with Coarse-Grained Molecular Dynamics Simulations. J. Chem. Inf. Model., 2022, 62, 936-944.

  11. Lingbing Yang, Xubo Lin, Jin Zhou, Sen Hou, Xuewei Bi, Li Yang, Linhao Li*, Yubo Fan*. Cell Membrane-Biomimetic Coating via Click-Mediated Liposome Fusion for Mitigating the Foreign-Body Reaction. Biomaterials, 2021, 271, 120768.

  12. Xiaoqian Lin, Xubo Lin*. Designing Amphiphilic Janus Nanoparticles with Tunable Lipid Raft Affinity via Molecular Dynamics Simulation. Biomater. Sci.2021, 9, 8249-8258.

  13. Xiaoqian Lin, Xubo Lin*. Surface Ligand Rigidity Modulates Lipid Raft Affinity of Ultra-small Hydrophobic Nanoparticles: Insights from Molecular Dynamics Simulations. Nanoscale2021, 13, 9825-9833.

  14. Xiaoqian Lin, Xubo Lin*, Ning Gu*. Optimize Hydrophobic Nanoparticles to Better Target Lipid Rafts with Molecular Dynamics Simulations. Nanoscale2020, 12, 4101-4109.

  15. Xubo Lin*, Alemayehu A. Gorfe*. Transmembrane Potential of Physiologically Relevant Model Membranes: Effects of Membrane Asymmetry. J. Chem. Phys., 2020, 153, 105103.

  16. Xiaoqian Lin#, Xiu Li#, Xubo Lin*. A Review on Applications of Computational Methods in Drug Screening and Design. Molecules2020, 25, 1375. (谷歌学术引用近700次, ESI高被引论文)

  17. Fangzhou Hu, Borislav Angelov, Shuang Li, Na Li, Xubo Lin*, Aihua Zou*Single‐molecule study of peptides with the same amino acid composition but different sequences using an aerolysin nanoporeChemBioChem, 2020, 21, 2467-2473.

  18. Min Zhang#, Lei Liu#, Xubo Lin, Ying Li, Shulin Li, Yuxin Sun, Di Zhang, Xiachen Lv, Liang Ge*A translocation pathway for vesicle-mediated unconventional protein secretionCell, 2020, 181, 637-652.e15.

  19. Siya Zhang, Xubo Lin*. Lipid Acyl Chain cis Double Bond Position Modulates Membrane Domain Registration/Anti-registration. J. Am. Chem. Soc., 2019, 141, 15884-15890. (F1000Prime Recommended)

  20. Fujia Tian, Xubo Lin*, Russell P. Valle, Yi Y. Zuo*, Ning Gu*. Poly(amidoamine) Dendrimer as a Respiratory Nanocarrier: Insights from Experiments and Molecular Dynamics Simulations. Langmuir2019, 35, 15, 5364-5371. (Supplementary Cover)

  21. Xubo Lin* and Alemayehu A. Gorfe*. Understanding Membrane Domain-Partitioning Thermodynamics of Transmembrane Domains with Potential of Mean Force Calculations. J. Phys. Chem. B, 2019, 123, 1009-1016.

  22. Jiebo Li#, Qi Zhang#, Li Yan, Guorong Wu, Mingjun Hu*Xubo Lin*, Kaijun Yuan*, Xueming Yang. Ultrafast Flash Energy Conductance at MXene-Surfactant Interface and Its Molecular OriginsAdvanced Materials Interfaces, 2019, 6, 1901461.

  23. Xubo Lin, Alemayehu A. Gorfe*, Ilya Levental*. Protein Partitioning into Ordered Membrane Domains: Insights from Simulations. Biophys. J., 2018, 114, 1936-1944.

  24. Xubo Lin, Hongyin Wang#, Zhichao Lou#, Meng Cao#, Zuoheng Zhang, Ning Gu*. Roles of PIP2 in the Membrane Binding of MIM I-BAR: Insights from Molecular Dynamics Simulations. FEBS Lett., 2018, 592, 2533-2542.

  25. Xubo Lin, Vinay Nair, Yong Zhou, Alemayehu A. Gorfe*. Membrane Potential and Dynamics in a Ternary Lipid Mixture: Insights from Molecular Dynamics Simulations. Phys. Chem. Chem. Phys., 2018, 20, 15841-15851.

  26. Yang Wang#, Cecylia Severin Lupala#, Haiguang Liu*, Xubo Lin*Identification of Drug Binding Sites and Action Mechanisms with Molecular Dynamics SimulationsCurrent Topics in Medicinal Chemistry, 2018, 18, 2268-2277. (Invited Review)


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